API Reference

import scfair as scf

Public surface: the names below, plus scfair.__version__. Everything else in scfair.pp is an implementation detail.

Signatures come from the source docstrings. Defaults are n_top_genes="auto" and balance_method="append" (set equals top-(k+m)). Usage: Quickstart, How selection works.

Preprocessing (scfair.pp)

highly_variable_genes	Select highly variable genes (structure auto-n + cutoff append).
HVGOptions	Secondary controls for HVG selection.
diagnose_from_labels	Imbalance diagnosis from an obs label column (pre-call planning).
estimate_n_populations	Report how many populations this dataset's density field supports.
restore_raw_counts	Restore raw counts into .X from a snapshot or counts layer.

Package

__version__

str(object='') -> str str(bytes_or_buffer[, encoding[, errors]]) -> str